PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi07g07600.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family bHLH
Protein Properties Length: 595aa    MW: 65055.6 Da    PI: 5.2452
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi07g07600.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.31.1e-12411456454
                      HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
              HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                      +h e+Er+RR+++N++f  Lr ++P+       K++Ka+ L  A+ YI++L
  Vradi07g07600.1 411 NHVEAERQRREKLNQRFYALRAVVPNV-----SKMDKASLLGDAISYINEL 456
                      799***********************6.....5***************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142157.6E-5872252IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088817.39407456IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474596.28E-19410476IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.65E-14410461No hitNo description
Gene3DG3DSA:4.10.280.104.2E-19411476IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.6E-10411456IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.3E-16413462IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009269Biological Processresponse to desiccation
GO:0009611Biological Processresponse to wounding
GO:0009737Biological Processresponse to abscisic acid
GO:0009867Biological Processjasmonic acid mediated signaling pathway
GO:0009963Biological Processpositive regulation of flavonoid biosynthetic process
GO:0010200Biological Processresponse to chitin
GO:0043619Biological Processregulation of transcription from RNA polymerase II promoter in response to oxidative stress
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0051090Biological Processregulation of sequence-specific DNA binding transcription factor activity
GO:2000068Biological Processregulation of defense response to insect
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 595 aa     Download sequence    Send to blast
MTEYRSPPTM NLWTDDNTSV MEAFMSSSDF SSLWLPTPQS AASSTTPGAD ASRAPPPPPP  60
SQSQSLLNQE TLQQRLQTLI EGARESWTYA IFWQSSYDYS SGASLLGWGD GYYKGEEDKG  120
KGKAPKETSS AEQDHRKKVL RELNSLISGP SASADDVDEE VSDTEWFFLV SMTQSFVNGS  180
GLPGQAFFNS SPVWVAGPDR LSESACERAR QAQVFGLQTL VCIPSANGVV ELASTEVIFQ  240
NPDLMNKVRD LFNFSNPDAG SWQLNCVATD QGENDPSSLW LNPSSSIEIK DTSNAVAPAS  300
ANATVSKTMP FETPGSSTLT ETPSAAAAAA HIPNPKNQGF FPRELNFSNS LKPESGEILS  360
FGESKKSSYN GSYFPAVAAE ETNKKRRVVE PEKRPRKRGR KPANGREEPL NHVEAERQRR  420
EKLNQRFYAL RAVVPNVSKM DKASLLGDAI SYINELKSKL SELESEKGEL EKQLDSAKKE  480
LELSTKNPSP PSPPRGPSPS NKEAKETTSK LIDLEVEVKI IGWDAMIRIQ CSKKNHPAAR  540
LMAALKDLDL DVHHASVSVV NDLMIQQATV NMGNRFYTQE QLLSALSSKI GHAL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4rru_A1e-716724843227Transcription factor MYC3
4ywc_A1e-716724843227Transcription factor MYC3
4ywc_B1e-716724843227Transcription factor MYC3
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1384397KRRVVEPEKRPRKR
2385401RRVVEPEKRPRKRGRKP
3392400KRPRKRGRK
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00084PBMTransfer from AT1G32640Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150340.0AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014509886.10.0PREDICTED: transcription factor MYC2-like
SwissprotQ392040.0MYC2_ARATH; Transcription factor MYC2
TrEMBLA0A0S3R3L20.0A0A0S3R3L2_PHAAN; Uncharacterized protein
TrEMBLA0A0L9TND30.0A0A0L9TND3_PHAAN; Uncharacterized protein
STRINGGLYMA01G12740.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF29383364
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32640.10.0bHLH family protein